Dedukh D., Maslova A., Al-Rikabi A., Padutsch N., Liehr T., Krasikova A.
Karyotypes of water frogs from the Pelophylax esculentus complex: results of cross-species chromosomal painting
Chromosoma (2023). DOI:10.1007/s00412-023-00812-8
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Krasikova, A., Kulikova, T., Rodriguez Ramos, J.S., Maslova, A.
Assignment of the somatic A/B compartments to chromatin domains in giant transcriptionally active lampbrush chromosomes.
Epigenetics & Chromatin 16, 24 (2023). DOI: 10.1186/s13072-023-00499-2.
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Krasikova, A., Fishman V., Kulikova T.
Lampbrush chromosome studies in the post-genomic era.
Bioessays: News and Reviews in Molecular, Cellular and Developmental Biology. (2023) DOI:10.1002/bies.202200250
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Maslova A., Plotnikov V., Nuriddinov M. Gridina M., Fishman V., Krasikova A.
Hi-C analysis of genomic contacts revealed karyotype abnormalities in chicken HD3 cell line.
BMC Genomics. (2023) DOI:10.1186/s12864-023-09158-y
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Nurislamov, A.; Lagunov, T.; Gridina, M.; Krasikova, A.; Fishman, V.
Single-cell DNA methylation analysis of chicken lampbrush chromosomes.
International Journal of Molecular Sciences. (2022) DOI:10.3390/ijms232012601
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Gridina M., Taskina A., Lagunov T., Nurislamov A., Kulikova T.,Krasikova A., Fishman V.
Comparison and critical assessment of single-cell Hi-C protocols.
Heliyon. (2022) DOI:10.1016/j.heliyon.2022.e11023
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Kulikova T., Maslova A., Starshova P., Rodriguez Ramos J.S., Krasikova A.
Comparison of the somatic TADs and lampbrush chromomere-loop complexes in transcriptionally active prophase I oocytes.
Chromosoma. (2022) DOI:10.1007/s00412-022-00780-5.
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Kulikova, T., Krasikova, A.
RNA-FISH on Lampbrush Chromosomes: Visualization of Individual Transcription Units
In: Cytogenetics and Molecular Cytogenetics, T. Liehr (Editor), CRC Press, Boca Raton, 2022, ISBN: 978-1003223658, (pp. 307-317).
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Dedukh D., Riumin S., Kolenda K., Chmielewska M., Rozenblut-Koscisty B., Kazmierczak M., Ogielska M., Krasikova A.
Maintenance of pure hybridogenetic water frog populations: Genotypic variability in progeny of diploid and triploid parents.
PLOS ONE 17(7):e0268574 (2022) DOI:10.1371/journal.pone.0268574.
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A. Maslova, A. Krasikova
FISH going meso-scale: a microscopic search for chromatin domains.
Frontiers in Cell and Developmental Biology.9:753097 (2021) DOI: 10.3389/fcell.2021.753097
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Dedukh D., Krasikova A.
Delete and survive: strategies of programmed genetic material elimination in eukaryotes.
Biological Reviews. (2021) DOI:10.1111/brv.12796
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Dedukh D, Riumin S, Chmielewska M, Rozenblut-Koscisty B, Kolenda K, Kazmierczak M, Dudzik A, Ogielska M, Krasikova A.
Micronuclei in germ cells of hybrid frogs from Pelophylax esculentus complex contain gradually eliminated chromosomes.
Scientific Reports. 10, 8720 (2020) DOI: 10.1038/s41598-020-64977-3
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Zlotina A., Maslova A., Pavlova O., Kosyakova N., Al-Rikabi A.,Liehr T., Krasikova A.
Insights Into Chromomere Organization Provided by Lampbrush Chromosome Microdissection and High-Throughput Sequencing.
Frontiers in Genetics. 11:57 (2020) DOI: 10.3389/fgene.2020.00057
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Kulikova T, Surkova A, Zlotina A, Krasikova A.
Mapping epigenetic modifications on chicken lampbrush chromosomes.
Molecular Cytogenetics. 13:32 (2020) DOI: 10.1186/s13039-020-00496-0
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Krasikova A.V. Kulikova T.V.
Lampbrush chromosomes: current concepts and research perspectives.
St Petersburg University Publishing House, 2019. 104 p. ISBN 978-5-288-05984-1 [In Russian].
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Zlotina A., Maslova A., Kosyakova N., Al-Rikabi A.B.H., Liehr T. and Krasikova A.
Heterochromatic regions in Japanese quail chromosomes: comprehensive molecular-cytogenetic characterization and 3D mapping in interphase nucleus.
Chromosome Research, 27(3):253-270 (2019) DOI: 10.1007/s10577-018-9597-9
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Dedukh D., Litvinchuk J., Svinin A., Litvinchuk S., Rosanov J.and Krasikova A.
Variation in hybridogenetic hybrid emergence between populations of water frogs from the Pelophylax esculentus complex.
PloS One. 14(11) (2019) DOI: 10.1371/journal.pone.0224759
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Krasikova A, Kulikova T.
Identification of Genomic Loci Responsible for the Formation of Nuclear Domains Using Lampbrush Chromosomes.
Noncoding RNA. 6(1):1 (2019) DOI: 10.3390/ncrna6010001
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Fishman, V., Battulin, N., Nuriddinov, M., Maslova, A., Zlotina, A., Strunov, A., Chervyakova, D., Korablev, A., Serov, O., Krasikova, A.
3D organization of chicken genome demonstrates evolutionary conservation of topologically associated domains and highlights unique architecture of erythrocytes' chromatin.
Nucleic Acids Research. DOI: 10.1093/nar/gky1103 (2018)
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Chmielewska, M., Dedukh, D., Haczkiewicz, K., Rozenblut-Kościsty, B., Kaźmierczak, M., Kolenda, K., Serwa, E., Pietras-Lebioda, A., Krasikova, A., Ogielska, M.
The programmed DNA elimination and formation of micronuclei in germ line cells of the natural hybridogenetic water frog Pelophylax esculentus.
Scientific Reports, 8 (1) 7870 (2018)
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Zlotina A., Dedukh D., Krasikova A.
Amphibian and Avian Karyotype Evolution: Insights from Lampbrush Chromosome Studies.
Genes (2017). V.8(11). doi: 10.3390/genes8110311
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D. Dedukh, S. Litvinchuk, J. Rosanov, D. Shabanov, A. Krasikova
Mutual maintenance of di- and triploid Pelophylax esculentus hybrids in R-E systems: results from artificial crossings experiments.
BMC Evolutionary Biology 17:220 (2017).
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A. V. Krasikova, T. V. Kulikova
Distribution of heterochromatin markers in lampbrush chromosomes in birds.
Russian Journal of Genetics 53(9): 1022–1029 (2017)
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Dedukh, D.V., Krasikova, A.V.
Methodological approaches for studying the european water frog Pelophylax esculentus complex.
Russ J Genet (2017) 53: 843.
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Kulikova T., Khodychenko T., Petrov Y., Krasikova A.
Low-voltage scanning electron microscopy study of lampbrush chromosomes and nuclear bodies in avian and amphibian oocytes.
Scientific Reports - 2016.- V.6 (36878). - doi: 10.1038/srep36878
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I. Trofimova, A. Krasikova.
Transcription of highly repetitive tandemly organized DNA in amphibians and birds: a historical overview and modern concepts.
RNA Biology, 2016. DOI: 10.1080/15476286.2016.1240142
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A.Zlotina, A. Krasikova.
FISH in Lampbrush Chromosomes.
In: Fluorescence in situ Hybridization (FISH) – Application Guide, T Liehr (Editor), 2nd Ed., Springer, Berlin, 2017, ISBN: 978-3662529577, pp. 445-458.

Krasikova A., Kulikova T.
Atomic Force Microscopy of the avian and amphibian lampbrush chromosome.
The Russian Journal of Ornithology. - 2016. - V. 25 (1338) - P. 3457-3463.
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Krasikova A., Kulikova T., Zlotina A.
Lampbrush chromosomes as a model for exploration into loci of nuclear domains formation.
Cell and Tissue Biology. - 2016. - V. 58 (4) - P. 277-280.

Kondratov K., Kurapeev D., Popov M., Sidorova M., Minasian S., Galagudza M., Kostareva A., Fedorov A.
Heparinase treatment of heparin-contaminated plasma from coronary artery bypass grafting patients enables reliable quantification of microRNAs.
Biomolecular Detection and Quantification. - 2016. - V. 8 - P. 9-14. - DOI: 10.1016/j.bdq.2016.03.001
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Zlotina A., Nikulina T., Yany N., Moiseeva O., Pervunina T., Grekhov E., Kostareva A.
Ring chromosome 18 in combination with 18q12.1 (DTNA) interstitial microdeletion in a patient with multiple congenital defects.
Mol Cytogenet. - 2016. - V. 9(18) - DOI: 10.1186/s13039-016-0229-9
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Zlotina A., Kulikova T., Kosyakova N., Liehr T., Krasikova A.
Microdissection of lampbrush chromosomes as an approach for generation of locus-specific FISH-probes and samples for high-throughput sequencing.
BMC Genomics. - 2016. - 17:126 - DOI: 10.1186/s12864-016-2437-4
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Zlotina A., Kulikova T., Kosyakova N., Liehr T., Krasikova A.
Microdissection of lampbrush chromosomes as an approach for generation of locus-specific FISH-probes and samples for high-throughput sequencing.
Chromosome Research. - 2015. - V.23(S1). - P. 125-126

Trofimova I., Popova D., Krasikova A.
Non-coding RNA derived from a conservative subtelomeric tandem repeat in embryos and adult tissues of Galliformes species revealed by fluorescent in situ hybridization approach.
Chromosome Research. - 2015. - V.23(S1). - P. 127-128

Litvinchuk S., Borkin L., Litvinchuk Y., Rosanov, J.
Distribution and population systems of green frogs (Pelophylax esculentus complex) in Kaliningrad oblast’, Russia (Baltic Sea region).
Russian Journal of Herpetology. - 2015. - V. 22(3) - P. 188-196.

Dedukh D., Litvinchuk S., Rosanov J., Shabanov D., Krasikova A.
Crossing experiments reveal gamete contribution into appearance of di- and triploid hybrid frogs in Pelophylax esculentus population systems.
Chromosome Research. - 2015. - V.23(2). - P. 380-381

Kulikova T., Chervyakova D., Zlotina A., Krasikova A., Gaginskaya E.
Giant poly (A)-rich RNP aggregates form at terminal regions of avian lampbrush chromosomes.
Chromosoma. - 2015. - P. 1-16 - DOI:10.1007/s00412-015-0563-4
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Trofimova I., Chervyakova D., Krasikova A.
Transcription of subtelomere tandemly repetitive DNA in chicken embryogenesis.
Chromosome Research. - 2015. - V. 23(3) - P. 495-503 - DOI: 10.1007/s10577-015-9487-3
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Maslova A., Zlotina A., Kosyakova N., Sidorova M., Krasikova A.
Three-dimensional architecture of tandem repeats in chicken interphase nucleus.
Chromosome Research. - 2015. - V. 23(3) - P. 625-639 - DOI: 10.1007/s10577-015-9485-5
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Krasikova A., Fedorov A.
Expression Profiles of Long and Short RNAs in the Cytoplasm and Nuclei of Growing Chicken (Gallus gallus domesticus) Oocytes
Russian Journal of Genetics. Applied Research - 2015. - V. 6(3) - P. 307–313.
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Dedukh D., Litvinchuk S., Rosanov J., Mazepa G., Saifitdinova A., Shabanov D., Krasikova A.
Optional Endoreplication and Selective Elimination of Parental Genomes during Oogenesis in Diploid and Triploid Hybrid European Water Frogs.
PLoS ONE. - 2015. - V. 10(4).
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Chervyakova D., Zlotina A., Kulikova T., Fedorov A., Krasikova A.
The non-coding tandem repeat LL2R on chicken chromosome 2 is transcribed in growing oocytes at the lampbrush stage.
FEBS Journal. - 2014. - V. 281(S1). - P. 399.

Trofimova I., Popova D., Chervyakova D., Krasikova A.
Conservative subtelomeric tandem PO41 repeat is transcribed both in chicken and Japanese quail somatic cells.
FEBS Journal. - 2014. - V. 281(S1). - P. 390.

Shvetsov A., Lebedev D., Chervyakova D., Bakhlanova I., Yung I.A., Radulescu A., Kuklin A., Baitin D., Isaev-Ivanov V.
Structure of the RecX protein compex with the presynaptic RecA filament: molecular dynamics simulations and small angle neutron scattering.
FEBS Letters. - 2014. - V. 88(6) - P. 948-955.
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Trofimova I., Popova D., Vasilevskaya E., Krasikova A.
Non-coding RNA derived from a conservative subtelomeric tandem repeat in chicken and Japanese quail somatic cells.
Molecular Cytogenetics. - 2014. - V. 7(102). - P. 1-13.
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Khodyuchenko T., Krasikova A.
Cajal bodies and histone locus bodies: Molecular composition and function.
Russian Journal of Developmental Biology. - 2014. - V. 45(6). - P. 297–312.
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Maslova A., Krasikova A.
Inhibition of nuclear actin polymerisation alters genome architecture in transcriptionally active avian and amphibian oocytes.
FEBS Journal. - 2013. - V. 280(S1). - P. 18-19

Krasikova A.
Non-coding transcripts of tandem repeats involved into formation of nuclear domains in growing oocytes.
FEBS Journal. - 2013. - V. 280(S1). - P. 30

Khodyuchenko T., Krasikova A.
Nuclear bodies involved in U snRNPs biogenesis in late stage pigeon oocyte nucleus.
FEBS Journal. - 2013. - V. 280(S1). - P. 52

Dedukh D., Mazepa G., Shabanov D., Rosanov J., Litvinchuk S., Borkin L., Saifitdinova A., Krasikova A.
Cytological maps of lampbrush chromosomes of European water frogs (Pelophylax esculentus complex) from the Eastern Ukraine.
BMC Genetics. - 2013. - V. 14(26). - P. 1-20.
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Maslova A, Krasikova A.
Nuclear actin depolymerization in transcriptionally active avian and amphibian oocytes leads to collapse of intranuclear structures.
Nucleus. - 2012. - V. 1;3(3). - P. 300-311.
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Krasikova A., Khodyuchenko T, Maslova A, Vasilevskaya E.
Three-dimensional organisation of RNA-processing machinery in avian growing oocyte nucleus.
Chromosome Research. - 2012. - V. 20 (8). - P. 979-994. DOI: 10.1007/s10577-012-9321-0
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Zlotina A., Galkina S., Krasikova A., Crooijmans R.P., Groenen M.A., Gaginskaya E., Deryusheva S.
Centromere positions in chicken and Japanese quail chromosomes: de novo centromere formation versus pericentric inversions.
Chromosome Research. - 2012. - V. 20 (8). - P. 1017-1032. DOI: 10.1007/s10577-012-9319-7
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Krasikova A., Fukagawa T., Zlotina A.
High-resolution mapping and transcriptional activity analysis of chicken centromere sequences on giant lampbrush chromosomes.
Chromosome Research. - 2012. - V. 20 (8). - P. 995-1008. DOI: 10.1007/s10577-012-9321-0
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Khodyuchenko T., Gaginskaya E., Krasikova A.
Non-canonical Cajal bodies form in the nucleus of late stage avian oocytes lacking functional nucleolus.
Histochem Cell Biol. - 2012. - V 138(1). - P. 57-73.
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Zlotina A., Krasikova A., Deryusheva S., Crooijmans R., Groenen M., Gaginskaya E., Galkina S.
Comparative cytogenetic analysis of centromere positions in chicken and Japanese quail karyotypes using giant lampbrush chromosomes.
Chromosome Research. - 2011. - V. 19(S.1). - P. 9

Maslova A., Krasikova A.
Spatial Arrangement of Macro-, Midi-, and Microchromosomes in Transcriptionally Active Nuclei of Growing Oocytes in Birds of the Order Galliformes.
Cell and Tissue Biology. - 2011. - V. 5(3), P. 281-293.
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Vasilevskaya E., Krasikova A., Gaginskaya E.
Synthesis and nuclear compartmentalization of satellite DNA transcripts in growing avian oocytes.
Chromosome Res. - 2010. - V. 18. - P. 739–740.

Krasikova A., Vasilevskaya E., Gaginskaya E.
Chicken Lampbrush chromosomes: Transcription of Tandemly Repetitive DNA Sequences.
Russian Journal of Genetics. - 2010. - V. 46(10). - P. 1173–1177.
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Daks A., Deryusheva S., Krasikova A., Zlotina A., Gaginskaya E., Galkina S.
Lampbrush chromosomes of the Japanese quail (Coturnix coturnix japonica): A new version of cytogenetic maps.
Russian Journal of Genetics. - 2010. - V. 46(10). - P. 1178-1181.
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Zlotina A., Galkina S., Krasikova A., Crooijmans R.P., Groenen M.A., Gaginskaya E., Deryusheva S.
Precise centromere positioning on chicken chromosome 3.
Cytogenet Genome Res. - 2010. - V. 129(4). - P. 310-313.

Krasikova A., Daks A., Zlotina A., Gaginskaya E.
Polymorphic heterochromatic segments in Japanese quail microchromosomes.
Cytogenetics and Genome Research. – 2009. – V. 126. – P. 148-155.
"Molecular and Evolutionary Cytogenetics of Domestic Animals", Ed. by Iannuzzi, L., Villagómez, D.A.F., King, W.A.

Gaginskaya E., Kulikova T., Krasikova A.
Avian Lampbrush Chromosomes: a Powerful Tool for Exploration of Genome Expression.
Cytogenetics and Genome Research. – 2009. – V.124 (3-4) – P. 251-267.
"Chromosome Structure and Function", Ed. by A. Houben

Deryusheva S., Krasikova A., Kulikova T., GaginskayaE.
Tandem 41-bp repeats in chicken and Japanese quail genomes: FISH mapping and transcription analysis on lampbrush chromosomes.
Chromosoma. - 2007. - V. 116 (6) - P.519-530.
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Krasikova A., Deryusheva S., Galkina S., Kurganova A., Evteev A., Gaginskaya E.
On the positions of centromeres in chicken lampbrush chromosomes.
Chromosome Research. - 2006 - V. 14 - P.777-789.
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Krasikova A., Barbero J.L., Gaginskaya E.
Cohesion proteins are present in centromere protein bodies associated with avian lampbrush chromosomes.
Chromosome Research. - 2005. - V.13. - P.675-685.
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Krasikova A., Kulikova T., Saifitdinova A., Derjusheva S., Gaginskaya E.
Centromeric protein bodies on avian lampbrush chromosomes contain a protein detectable with an antibody against DNA topoisomerase II.
Chromosoma. - 2004. - V. 113. - P. 316–323.
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Derjusheva S., Kurganova A., Krasikova A., Saifitdinova A., Habermann F.A., Gaginskaya E.
Precize identification of chicken chromosomes in the lampbrush form using chromosome painting probes.
Chromosome Research. - 2003. - V. 11. - P. 749–757.
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Saifitdinova A., Derjusheva S., Krasikova A., Gaginskaya E.
Lampbrush chromosomes of the chaffinch (Fringilla coelebs L.).
Chromosome Research. - 2003. - V. 11(2). - P. 99–113.
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